PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0333s00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 261aa    MW: 29079.9 Da    PI: 7.119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0333s00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-164494255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GV++++ +g+++AeIrd    +kr  r++lg+f+ta eAaka ++a+ +l g
  Vang0333s00110.1 44 HYTGVCQRP-WGKFAAEIRDS---NKRwSRVWLGTFDTAIEAAKANDRAAFRLCG 94
                      89*******.**********4...3357***********************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-2643102No hitNo description
Gene3DG3DSA:3.30.730.101.7E-2743103IPR001471AP2/ERF domain
SMARTSM003801.6E-2844108IPR001471AP2/ERF domain
PfamPF008471.2E-114494IPR001471AP2/ERF domain
PROSITE profilePS5103219.63844102IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1944104IPR016177DNA-binding domain
PRINTSPR003672.4E-84556IPR001471AP2/ERF domain
PRINTSPR003672.4E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLLEPHIASQ ETSIKLETFS TNLSPQEGRV DQFGKSENQL EKKHYTGVCQ RPWGKFAAEI  60
RDSNKRWSRV WLGTFDTAIE AAKANDRAAF RLCGSKAILN FPLEVGAMDA TVKAEGERKR  120
QRQEEGVEEV KPVVKKEKTT EQEVNCFREM SLMPKVEDDQ STQMVSSSNL HIQASLELHH  180
YSIITIVFFS KILPPHAHAS IFHIHHTDHN PGPRSSILPF NSILNPLLFR SYLKYSNSTG  240
VGFGDASSVE GIAMVVAGGE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2643105163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0L9T5Q41e-116A0A0L9T5Q4_PHAAN; Uncharacterized protein
STRINGGLYMA11G03900.13e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-34ethylene responsive element binding factor 5